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Based on the natural history of COVID-19 and our previous studies (5-6), we developed a Susceptible-Exposed-Symptomatic-Asymptomatic-Recovered/Removed (SEIAR) model with R (version 4.1.0, R Foundation, Vienna, Austria) to predict the cumulative case outcome of booster vaccines on 50 million high-risk individuals (making up 1.43% of the total population), who were fully vaccinated. In the model, HRPs who had been fully vaccinated were divided into five categories: Vaccinated but still Susceptible (S) due to breakthrough infection, Exposed (E), Symptomatic (I), Asymptomatic (A), and Removed (R) including recovered and death. Booster vaccinated HRPs were also divided into five categories and denoted as S1, E1, I1, A1, and R1, respectively.
The model was based on the following assumptions:
a) Susceptible HRPs would be infected by contact with symptomatic/asymptomatic infections with a transmission relative rate of
$\beta $ .b) The latent period of an exposed person was
$ 1/\omega $ , the latent period of an asymptomatic person was$ 1/{\omega }{\text{'}} $ .c) Parameter p (0≤p≤1) gave the proportion of individuals who had asymptomatic infections.
d) The transmission rates of S were
$\beta $ and$\kappa \beta $ after effective contact with I and A (0≤$\kappa $ ≤1).e) Individuals in categories I and A were transferred into category R after an infectious period of
$1/\gamma $ and$1/\gamma{\text{'}} $ , respectively.f) Case fatality rate was 0 and was not simulated in the model because vaccines were highly protective against death.
g) We assumed that the infectivity and susceptibility would be reduced after vaccination (7-8). Vaccine efficacy against infectivity (VEI) and against susceptibility (VES) (7) due to booster vaccination were denoted as (1 - x) and (1 - y), respectively.
The flowchart of the booster vaccination SEIAR model was shown in Figure 1.
Figure 1.Flowchart of the booster vaccination susceptible-exposed-symptomatic-asymptomatic-recovered/removed (SEIAR) model.
The equations of the model were as follows:
$$\begin{aligned} &\frac{dS}{dt}=-\left(\frac{\beta S\left(I+\kappa A\right)}{N}+\frac{x\beta S\left({I}_{1}+\kappa {A}_{1}\right)}{N}\right) \\ & \frac{dE}{dt}=\left(\frac{\beta S\left(I+\kappa A\right)}{N}+\frac{x\beta S\left({I}_{1}+\kappa {A}_{1}\right)}{N}\right)-p{\omega }^{\text{'}}E-\left(1-p\right)\omega E\\ &\frac{dI}{dt}=\left(1-p\right)\omega E-\gamma I\\ &\frac{dA}{dt}=p{\omega }^{\text{'}}E-{\gamma }^{\text{'}}A \\ & \frac{d{S}_{1}}{dt}=-\left(\frac{y\beta {S}_{1}\left(I+\kappa A\right)}{N}+\frac{xy\beta {S}_{1}\left({I}_{1}+\kappa {A}_{1}\right)}{N}\right) \end{aligned} $$ $$ \begin{aligned} &\frac{d{E}_{1}}{dt}=\left(\frac{y\beta {S}_{1}\left(I+\kappa A\right)}{N}+\frac{xy\beta {S}_{1}\left({I}_{1}+\kappa {A}_{1}\right)}{N}\right)-p{\omega }^{\text{'}}{E}_{1}-\left(1-p\right)\omega {E}_{1}\\ &\frac{d{I}_{1}}{dt}=\left(1-p\right)\omega {E}_{1}-\gamma {I}_{1}\\ & \frac{d{A}_{1}}{dt}=p{\omega }^{\text{'}}{E}_{1}-{\gamma }^{\text{'}}{A}_{1}\\ & \frac{d{R}_{1}}{dt}=\gamma {I}_{1}+{\gamma }^{\text{'}}{A}_{1} \\ & N=S+E+I+A+R+{S}_{1}+{E}_{1}+{I}_{1}+{A}_{1}+{R}_{1} \end{aligned}$$ N was defined as the total population. The left side of the equation indicated the instantaneous change rate of each department at time t.
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Most parameter settings were based on our previous study (8). Considering the changes of the Delta variant, we edited the value of some parameters according to the latest research (9), including latent relative rates. The effective reproduction number (Reff ) was defined as the number of secondary cases an infected person can cause in a population after some interventions (8). In the study, Reff was adjusted from 4 to 6 based on the current immune barrier in China and
$ \beta $ was calculated by Reff ;$ 1-x $ and$ 1-y $ based on simulations;$ \omega $ and$ {\omega }^{\text{'}} $ were set as 0.33 and 0.20, respectively;$ \gamma $ was set as 0.2;$ {\gamma }^{\text{'}} $ was set as 0.1;$ \kappa $ was set as 0.6; and$ p $ was set as 0.5 (Supplementary Table S1).Based on our previous studies (4,8), the equation of Reff from the SEIAR model was shown as follows:
$$ {R}_{eff}=\frac{\beta }{\left(1-p\right)\omega +p{\omega }^{\text{'}}}\left(\frac{\left(1-p\right)\omega }{\gamma }+\frac{\kappa p{\omega }^{\text{'}}}{{\gamma }^{\text{'}}}\right) $$ -
In this study, 6 parameters were used to analyze the sensitivity of the model:
$ \kappa $ (0–1),$ \omega $ (0.056–0.500),$ {\omega }^{\text{'}} $ (0.056–0.500),$ \gamma $ (0.111-0.333),$ {\gamma }^{\text{'}} $ (0.048-1.000), and$ p $ (0–1). Each parameter was split into 20 values according to its range.
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Model Development
Parameter Estimation
Sensitivity Analysis
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