[1] Popa GL, Papa MI. Salmonella spp. infection—a continuous threat worldwide. Germs 2021;11(1):88 − 96. https://doi.org/10.18683/germs.2021.1244.
[2] Harrison OL, Rensing S, Jones CK, Trinetta V. Salmonella enterica 4,[5],12:i:-, an emerging threat for the swine feed and pork production industry. J Food Prot 2022;85(4):660 − 3. https://doi.org/10.4315/JFP-21-400.
[3] Teklemariam AD, Al-Hindi RR, Albiheyri RS, Alharbi MG, Alghamdi MA, Filimban AAR, et al. Human salmonellosis: a continuous global threat in the farm-to-fork food safety continuum. Foods 2023;12(9):1756. https://doi.org/10.3390/foods12091756.
[4] Sun HY, Cui ZG, Du XL, Fan FX, Sun BW, Diao BW, et al. Prevalence of Salmonella enterica serotype 4,[5],12:i:- from human sources: antimicrobial resistance, genotypic diversity and emergence of carbapenem resistance - China, 2017-2023. China CDC Wkly 2025;7(24):821 − 30. https://doi.org/10.46234/ccdcw2025.134.
[5] Moreau MR, Edison LK, Ivanov YV, Wijetunge DSS, Hewage EMKK, Linder JE, et al. Comparative patho-genomics of Salmonella enterica serovar enteritidis reveal potential host-specific virulence factors. Pathogens 2025;14(2):128. https://doi.org/10.3390/pathogens14020128.
[6] Wang YN, Xu XB, Jia SL, Qu MQ, Pei YH, Qiu SF, et al. A global atlas and drivers of antimicrobial resistance in Salmonella during 1900-2023. Nat Commun 2025;16(1):4611. https://doi.org/10.1038/s41467-025-59758-3.
[7] Peresi JTM, De Almeida IAZC, De Carvalho Teixeira IS, De Lima E Silva SI, Graciano RAS, Tiba-Casas MR. High rates of Salmonella contamination in raw kibbe from commercial establishments: predominance of Salmonella give. Int J Environ Health Res 2021;31(6):626 − 35. https://doi.org/10.1080/09603123.2019.1679356.
[8] Flórez NY, Arévalo SA, Rodríguez EC, Guerrero J, Valverde KP, Díaz PL, et al. An outbreak of Salmonella enterica subsp. enterica serovar Give associated with foodborne illness in the department of Vichada, Colombia, 2015. Biomedica 2021;41(1):41-51. http://dx.doi.org/10.7705/biomedica.5206.
[9] Wang YN, Liu Y, Lyu N, Li ZY, Ma SF, Cao DM, et al. The temporal dynamics of antimicrobial-resistant Salmonella enterica and predominant serovars in China. Natl Sci Rev 2022;10(3):nwac269. https://doi.org/10.1093/nsr/nwac269.
[10] Gurevich A, Saveliev V, Vyahhi N, Tesler G. QUAST: quality assessment tool for genome assemblies. Bioinformatics 2013;29(8):1072 − 5. https://doi.org/10.1093/bioinformatics/btt086.
[11] Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, Bentley SD, et al. Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res 2015;43(3):e15. https://doi.org/10.1093/nar/gku1196.
[12] Peirano G, Matsumara Y, Pitout JDD. Mobile genetic elements of global Escherichia coli ST131 clades with carbapenemases. Eur J Clin Microbiol Infect Dis 2025;44(9):2119 − 28. https://doi.org/10.1007/s10096-025-05187-5.
[13] Argueta F, Tatarenkov A, Mota-Bravo L. Multiple copies of a qnrB19 gene are carried by tandem repeats of an IS26 composite transposon in an Escherichia coli plasmid. Microbiol Resour Announc 2022;11(12):e00661 − 22. https://doi.org/10.1128/mra.00661-22.
[14] Seriki AT, Obi C, Olashile AA, Essiet UU, Akingboye DW, Ajayi A, et al. Genomic analysis of multidrug resistant Enterobacter hormaechei strain AH1-NIMR isolated from a neonate with sepsis in Lagos, Nigeria. Infect Chemother 2025;57(2):316 − 20. https://doi.org/10.3947/ic.2025.0040.
[15] Pallecchi L, Riccobono E, Sennati S, Mantella A, Bartalesi F, Trigoso C, et al. Characterization of small ColE-like plasmids mediating widespread dissemination of the qnrB19 gene in commensal enterobacteria. Antimicrob Agents Chemother 2010;54(2):678 − 82. https://doi.org/10.1128/AAC.01160-09.
[16] Monte DFM, de Lima Rocha AD, Lemos MLP, de Lima LA, Cabrera JM, da Silva NJ, et al. High prevalence of plasmid-mediated quinolone resistance in Salmonella enterica serovars isolated from surface water. Environ Microbiol 2025;27(7):e70140. https://doi.org/10.1111/1462-2920.70140.
[17] Piekarska K, Wołkowicz T, Zacharczuk K, Stepuch A, Gierczyński R. The mechanisms involved in the fluoroquinolone resistance of Salmonella enterica strains isolated from humans in Poland, 2018-2019: the prediction of antimicrobial genes by in silico whole-genome sequencing. Pathogens 2023;12(2):193. https://doi.org/10.3390/pathogens12020193.
[18] Jibril AH, Okeke IN, Dalsgaard A, Menéndez VG, Olsen JE. Genomic analysis of antimicrobial resistance and resistance plasmids in Salmonella serovars from poultry in Nigeria. Antibiotics (Basel) 2021;10(2):99. https://doi.org/10.3390/antibiotics10020099.
[19] Stein C, Zechel M, Spott R, Pletz MW, Kipp F. Multidrug-resistant isolates from Ukrainian patients in a German health facility: a genomic surveillance study focusing on antimicrobial resistance and bacterial relatedness. Infection 2023;51(6):1731 − 8. https://doi.org/10.1007/s15010-023-02061-4.
[20] Toyting J, Nuanmuang N, Utrarachkij F, Supha N, Thongpanich Y, Leekitcharoenphon P, et al. Genomic analysis of Salmonella isolated from canal water in Bangkok, Thailand. Microbiol Spectr 2024;12(5):e04216 − 23. https://doi.org/10.1128/spectrum.04216-23.
[21] Suwanthada P, Kongsoi S, Jayaweera S, Akapelwa ML, Thapa J, Nakajima C, et al. Interplay between amino acid substitution in GyrA and QnrB19: elevating fluoroquinolone resistance in Salmonella typhimurium. ACS Infect Dis 2024;10(8):2785 − 94. https://doi.org/10.1021/acsinfecdis.4c00150.
[22] Allou N, Cambau E, Massias L, Chau F, Fantin B. Impact of low-level resistance to fluoroquinolones due to qnrA1 and qnrS1 genes or a gyrA mutation on ciprofloxacin bactericidal activity in a murine model of Escherichia coli urinary tract infection. Antimicrob Agents Chemother 2009;53(10):4292 − 7. https://doi.org/10.1128/AAC.01664-08.
[23] Mathers AJ, Peirano G, Pitout JDD. The role of epidemic resistance plasmids and international high-risk clones in the spread of multidrug-resistant Enterobacteriaceae. Clin Microbiol Rev 2015;28(3):565 − 91. https://doi.org/10.1128/CMR.00116-14.
[24] Nuanmuang N, Leekitcharoenphon P, Njage PMK, Gmeiner A, Aarestrup FM. An overview of antimicrobial resistance profiles of publicly available Salmonella genomes with sufficient quality and metadata. Foodborne Pathog Dis 2023;20(9):405 − 13. https://doi.org/10.1089/fpd.2022.0080.
[25] Braga PRC, dos Santos CA, de Jesus Bertani AM, Vieira T, Amarante AF, Reis AD, et al. Detection and genomic characterization of a multidrug-resistant Salmonella Newport co-harbouring blaCMY-2, qnrB19 and mcr-9 from the diarrheic faeces of a foal. J Glob Antimicrob Resist 2023;35:198 − 201. https://doi.org/10.1016/j.jgar.2023.09.019.
[26] Corradini C, De Bene AF, Russini V, Carfora V, Alba P, Cordaro G, et al. Detection of Salmonella reservoirs in birds of prey hosted in an Italian wildlife Centre: molecular and antimicrobial resistance characterisation. Microorganisms 2024;12(6):1169. https://doi.org/10.3390/microorganisms12061169.
[27] Chen Z, Delgado Suárez EJ, Bonelli RR, Oliveira CJB, Moreno-Switt AI, Adell AD, et al. Exploring the genomic and antimicrobial resistance tapestry: comparative insights into Salmonella enterica serotypes Agona, Braenderup, Muenchen, and Panama in Latin American surface waters. Microbiol Spectr 2025;13(2):e01706 − 24. https://doi.org/10.1128/spectrum.01706-24.
[28] Aworh MK, Nilsson P, Egyir B, Owusu FA, Hendriksen RS. Rare serovars of non-typhoidal Salmonella enterica isolated from humans, beef cattle and abattoir environments in Nigeria. PLoS One 2024;19(1):e0296971. https://doi.org/10.1371/journal.pone.0296971.
[29] Fan PH, Han HH, Liu JK, Ma XC, Zhang RH, Liu H, et al. Community incidence estimates of five pathogens based on foodborne diseases active surveillance — China, 2023. China CDC Wkly 2024;6(24):574 − 9. https://doi.org/10.46234/ccdcw2024.112.