[1] Marshall BM, Levy SB. Food animals and antimicrobials: impacts on human health. Clin Microbiol Rev 2011;24(4):718 − 33. http://dx.doi.org/10.1128/CMR.00002-11CrossRef
[2] Rodrigues GL, Panzenhagen P, Ferrari RG, Paschoalin VMF, Conte-Junior CA. Antimicrobial resistance in nontyphoidal Salmonella isolates from human and swine sources in brazil: a systematic review of the past three decades. Microb Drug Resist 2020;26(10):1260 − 70. http://dx.doi.org/10.1089/mdr.2019.0475CrossRef
[3] Landman D, Georgescu C, Martin DA, Quale J. Polymyxins revisited. Clin Microbiol Rev 2008;21(3):449 − 65. http://dx.doi.org/10.1128/CMR.00006-08CrossRef
[4] Liu YY, Wang Y, Walsh TR, Yi LX, Zhang R, Spencer J, et al. Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study. Lancet Infect Dis 2016;16(2):161 − 8. http://dx.doi.org/10.1016/S1473-3099(15)00424-7CrossRef
[5] Meletis G, Skoura L. Polymyxin resistance mechanisms: from intrinsic resistance to Mcr genes. Recent Pat Antiinfect Drug Discov 2018;13(3):198 − 206.
[6] Prim N, Rivera A, Rodríguez-Navarro J, Espanol M, Turbau M, Coll P, et al. Detection of mcr-1 colistin resistance gene in polyclonal Escherichia coli isolates in Barcelona, Spain, 2012 to 2015. Euro Surveill 2016;21(13):30183. http://dx.doi.org/10.2807/1560-7917.ES.2016.21.13.30183.CrossRef
[7] Carattoli A, Hasman H. PlasmidFinder and in silico pMLST: identification and typing of plasmid replicons in whole-genome sequencing (WGS). Methods Mol Biol 2020;2075:285 − 94. http://dx.doi.org/10.1007/978-1-4939-9877-7_20CrossRef
[8] Bortolaia V, Kaas RS, Ruppe E, Roberts MC, Schwarz S, Cattoir V, et al. ResFinder 4.0 for predictions of phenotypes from genotypes. J Antimicrob Chemother 2020;75(12):3491 − 500. http://dx.doi.org/10.1093/jac/dkaa345CrossRef
[9] Fu LM, Niu BF, Zhu ZW, Wu ST, Li WZ. CD-HIT: accelerated for clustering the next-generation sequencing data. Bioinformatics 2012;28(23):3150 − 2. http://dx.doi.org/10.1093/bioinformatics/bts565CrossRef
[10] Letunic I, Bork P. Interactive Tree of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation. Nucleic Acids Res 2021;49(W1):W293 − 6. http://dx.doi.org/10.1093/nar/gkab301CrossRef
[11] Darling ACE, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 2004;14(7):1394 − 403. http://dx.doi.org/10.1101/gr.2289704CrossRef
[12] Hendrickx APA, Debast S, Pérez-Vázquez M, Schoffelen AF, Notermans DW, Landman F, et al. A genetic cluster of MDR Enterobacter cloacae complex ST78 harbouring a plasmid containing blaVIM-1 and mcr-9 in the Netherlands. JAC Antimicrob Resist 2021;3(2):dlab046. http://dx.doi.org/10.1093/jacamr/dlab046CrossRef
[13] Nang SC, Li J, Velkov T. The rise and spread of mcr plasmid-mediated polymyxin resistance. Crit Rev Microbiol 2019;45(2):131 − 61. http://dx.doi.org/10.1080/1040841X.2018.1492902CrossRef
[14] Evans DR, Griffith MP, Sundermann AJ, Shutt KA, Saul MI, Mustapha MM, et al. Systematic detection of horizontal gene transfer across genera among multidrug-resistant bacteria in a single hospital. eLife 2020;9:e53886. http://dx.doi.org/10.7554/eLife.53886CrossRef